Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 CRYGEP-201ENST00000412192 528 ntBASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 VN2R19P-201ENST00000442399 1052 ntBASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 FAM185BP-201ENST00000443595 716 ntBASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 AC087641.1-201ENST00000557561 1021 ntBASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 CYP2A7P1-201ENST00000595391 815 ntBASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 AL118508.1-201ENST00000613502 2345 ntBASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
AP4E1Q9UPM8 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 AL671710.1-201ENST00000610245 2349 ntBASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 IGLL3P-201ENST00000412472 434 ntBASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 HCG4-201ENST00000418983 998 ntBASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 AC026396.1-201ENST00000419388 421 ntBASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 CXCL1P1-201ENST00000502804 216 ntBASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 IL9RP2-201ENST00000423948 1312 ntBASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
AP4E1Q9UPM8 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 AC104109.2-201ENST00000602919 1418 ntBASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 AC145285.3-201ENST00000564603 959 ntBASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 AP001350.2-201ENST00000625104 1094 ntBASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
AP4E1Q9UPM8 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
AP4E1Q9UPM8 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
AP4E1Q9UPM8 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
AP4E1Q9UPM8 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
AP4E1Q9UPM8 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
AP4E1Q9UPM8 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
AP4E1Q9UPM8 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.41■□□□□ 0.38
AP4E1Q9UPM8 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
AP4E1Q9UPM8 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms