Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 AC024909.3-201ENST00000611513 2257 ntBASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 AL732292.2-201ENST00000609649 430 ntBASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 AC004706.3-202ENST00000621574 984 ntBASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 AL603832.2-201ENST00000566195 2125 ntBASIC18.37■□□□□ 0.53
LIMA1Q9UHB6 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 FOSL1P1-201ENST00000511041 816 ntBASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 AC139887.3-201ENST00000568585 713 ntBASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 AC091167.2-201ENST00000579581 588 ntBASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 MTDHP3-201ENST00000594186 672 ntBASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 AC091076.1-201ENST00000610741 619 ntBASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 AF228730.7-201ENST00000641842 219 ntBASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LIMA1Q9UHB6 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 PTCHD3P3-201ENST00000403073 906 ntBASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 AL355877.3-201ENST00000622820 899 ntBASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 AC132872.4-202ENST00000622924 2756 ntBASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms