Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 AP000842.3-202ENST00000569238 1080 ntBASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 LINC00896-202ENST00000609602 2128 ntBASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 AC100757.3-201ENST00000622361 1406 ntBASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 MIR346-201ENST00000362234 95 ntBASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 AC109635.5-201ENST00000533593 962 ntBASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMD1Q9UGP4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 AC073592.8-201ENST00000624126 511 ntBASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 AC138028.4-201ENST00000564984 1845 ntBASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 AC012313.1-201ENST00000593393 3059 ntBASIC17.49■□□□□ 0.39
LIMD1Q9UGP4 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms