Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 AC005052.1-201ENST00000625181 2492 ntBASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 AL391256.1-201ENST00000443260 1855 ntBASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 ACTG1P4-201ENST00000425123 1122 ntBASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM56Q9BRZ2 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRIM56Q9BRZ2 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRIM56Q9BRZ2 AP005117.1-201ENST00000584346 1413 ntBASIC17.21■□□□□ 0.34
TRIM56Q9BRZ2 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRIM56Q9BRZ2 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.21■□□□□ 0.34
TRIM56Q9BRZ2 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 AC064862.7-201ENST00000604520 867 ntBASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.2■□□□□ 0.34
TRIM56Q9BRZ2 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 AL121894.2-201ENST00000602977 491 ntBASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms