Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
NKX3-1Q99801 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NKX3-1Q99801 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC14.73□□□□□ -0.05
NKX3-1Q99801 AC073592.5-201ENST00000624854 528 ntBASIC14.73□□□□□ -0.05
NKX3-1Q99801 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 AC068418.2-201ENST00000577309 3703 ntBASIC14.73□□□□□ -0.05
NKX3-1Q99801 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NKX3-1Q99801 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.73□□□□□ -0.05
NKX3-1Q99801 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 KRT8P26-201ENST00000534154 1276 ntBASIC14.72□□□□□ -0.05
NKX3-1Q99801 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 AC090616.6-201ENST00000582640 721 ntBASIC14.72□□□□□ -0.05
NKX3-1Q99801 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 CYP2T1P-202ENST00000641596 2535 ntBASIC14.72□□□□□ -0.05
NKX3-1Q99801 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
NKX3-1Q99801 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
NKX3-1Q99801 FLJ16779-201ENST00000612722 7638 ntBASIC14.71□□□□□ -0.05
NKX3-1Q99801 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
NKX3-1Q99801 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.71□□□□□ -0.05
NKX3-1Q99801 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms