Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.24■□□□□ 0.67
USP28Q96RU2 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.23■□□□□ 0.67
USP28Q96RU2 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.23■□□□□ 0.67
USP28Q96RU2 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 GGT4P-201ENST00000623672 1708 ntBASIC19.23■□□□□ 0.67
USP28Q96RU2 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.23■□□□□ 0.67
USP28Q96RU2 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
USP28Q96RU2 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.23■□□□□ 0.67
USP28Q96RU2 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.23■□□□□ 0.67
USP28Q96RU2 SAPCD2P3-201ENST00000455031 850 ntBASIC19.23■□□□□ 0.67
USP28Q96RU2 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.23■□□□□ 0.67
USP28Q96RU2 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.23■□□□□ 0.67
USP28Q96RU2 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.23■□□□□ 0.67
USP28Q96RU2 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 AL805961.1-202ENST00000641562 540 ntBASIC19.23■□□□□ 0.67
USP28Q96RU2 AF228730.7-201ENST00000641842 219 ntBASIC19.23■□□□□ 0.67
USP28Q96RU2 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.23■□□□□ 0.67
USP28Q96RU2 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 SLC22A20-204ENST00000530038 1673 ntBASIC19.23■□□□□ 0.67
USP28Q96RU2 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.23■□□□□ 0.67
USP28Q96RU2 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.23■□□□□ 0.67
USP28Q96RU2 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.23■□□□□ 0.67
USP28Q96RU2 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.23■□□□□ 0.67
USP28Q96RU2 AL031731.1-201ENST00000642131 2094 ntBASIC19.23■□□□□ 0.67
USP28Q96RU2 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
USP28Q96RU2 MTHFR-217ENST00000641820 1569 ntBASIC19.23■□□□□ 0.67
USP28Q96RU2 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.23■□□□□ 0.67
USP28Q96RU2 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP28Q96RU2 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.22■□□□□ 0.67
USP28Q96RU2 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.22■□□□□ 0.67
USP28Q96RU2 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.22■□□□□ 0.67
USP28Q96RU2 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.22■□□□□ 0.67
USP28Q96RU2 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.22■□□□□ 0.67
USP28Q96RU2 PMS2P1-201ENST00000431037 1228 ntBASIC19.22■□□□□ 0.67
USP28Q96RU2 SCARNA2-201ENST00000458748 420 ntBASIC19.22■□□□□ 0.67
USP28Q96RU2 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.22■□□□□ 0.67
USP28Q96RU2 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.22■□□□□ 0.67
USP28Q96RU2 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.22■□□□□ 0.67
USP28Q96RU2 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.22■□□□□ 0.67
USP28Q96RU2 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
USP28Q96RU2 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
USP28Q96RU2 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP28Q96RU2 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.21■□□□□ 0.67
USP28Q96RU2 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
USP28Q96RU2 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
USP28Q96RU2 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
USP28Q96RU2 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP28Q96RU2 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms