Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 AC099336.1-202ENST00000602961 463 ntBASIC12.64□□□□□ -0.39
LINC00477Q96M19 AC013467.2-201ENST00000605472 835 ntBASIC12.64□□□□□ -0.39
LINC00477Q96M19 BCL10-202ENST00000620248 774 ntTSL 5 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 AL590787.1-201ENST00000568856 1315 ntBASIC12.63□□□□□ -0.39
LINC00477Q96M19 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 AP005117.1-201ENST00000584346 1413 ntBASIC12.63□□□□□ -0.39
LINC00477Q96M19 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 AC026691.1-201ENST00000602502 2017 ntBASIC12.63□□□□□ -0.39
LINC00477Q96M19 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 BET1L-206ENST00000486280 665 ntTSL 3 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 CYB561-217ENST00000582997 877 ntTSL 5 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 AL353135.1-201ENST00000606729 504 ntBASIC12.63□□□□□ -0.39
LINC00477Q96M19 AC069148.1-201ENST00000608741 768 ntBASIC12.63□□□□□ -0.39
LINC00477Q96M19 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 AC243591.1-201ENST00000452967 1364 ntBASIC12.63□□□□□ -0.39
LINC00477Q96M19 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC12.63□□□□□ -0.39
LINC00477Q96M19 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00477Q96M19 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 NCF1C-201ENST00000438382 1427 ntBASIC12.62□□□□□ -0.39
LINC00477Q96M19 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 AC006277.1-201ENST00000624348 1610 ntBASIC12.62□□□□□ -0.39
LINC00477Q96M19 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00477Q96M19 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC12.62□□□□□ -0.39
LINC00477Q96M19 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms