Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SKA3Q8IX90 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.94□□□□□ -0.02
SKA3Q8IX90 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SKA3Q8IX90 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 CSF3-203ENST00000394148 622 ntTSL 3 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 AC098831.1-202ENST00000438821 336 ntBASIC14.93□□□□□ -0.02
SKA3Q8IX90 DUX4L17-201ENST00000557360 1267 ntBASIC14.93□□□□□ -0.02
SKA3Q8IX90 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 GGTLC5P-201ENST00000617623 998 ntBASIC14.93□□□□□ -0.02
SKA3Q8IX90 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 AC005915.1-201ENST00000624912 2018 ntBASIC14.93□□□□□ -0.02
SKA3Q8IX90 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.93□□□□□ -0.02
SKA3Q8IX90 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SKA3Q8IX90 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
SKA3Q8IX90 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
SKA3Q8IX90 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC14.92□□□□□ -0.02
SKA3Q8IX90 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
SKA3Q8IX90 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC14.92□□□□□ -0.02
SKA3Q8IX90 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
SKA3Q8IX90 AC087163.2-201ENST00000457299 853 ntBASIC14.92□□□□□ -0.02
SKA3Q8IX90 IGHV3-65-201ENST00000523210 341 ntBASIC14.92□□□□□ -0.02
SKA3Q8IX90 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
SKA3Q8IX90 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
SKA3Q8IX90 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
SKA3Q8IX90 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
SKA3Q8IX90 AC105020.1-201ENST00000435356 2205 ntBASIC14.92□□□□□ -0.02
SKA3Q8IX90 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SKA3Q8IX90 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
SKA3Q8IX90 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
SKA3Q8IX90 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.91□□□□□ -0.02
SKA3Q8IX90 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
SKA3Q8IX90 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 FOS-208ENST00000555686 1496 ntTSL 2 BASIC14.91□□□□□ -0.02
SKA3Q8IX90 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC14.91□□□□□ -0.02
SKA3Q8IX90 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
SKA3Q8IX90 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC14.91□□□□□ -0.02
SKA3Q8IX90 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC14.91□□□□□ -0.02
SKA3Q8IX90 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.91□□□□□ -0.02
SKA3Q8IX90 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms