Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SCUBE3Q8IX30 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SCUBE3Q8IX30 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SCUBE3Q8IX30 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCUBE3Q8IX30 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SCUBE3Q8IX30 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.68■□□□□ 0.42
SCUBE3Q8IX30 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCUBE3Q8IX30 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCUBE3Q8IX30 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCUBE3Q8IX30 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCUBE3Q8IX30 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 AC023274.1-201ENST00000418278 595 ntBASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 PGAM5P1-201ENST00000518923 814 ntBASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 CYP2A7P1-201ENST00000595391 815 ntBASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 AC079328.2-201ENST00000561241 3354 ntBASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SCUBE3Q8IX30 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 HMGA1P7-201ENST00000406908 502 ntBASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 HCG4-201ENST00000418983 998 ntBASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 KRT19P2-202ENST00000557173 1012 ntBASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 SNX33P1-201ENST00000592116 1762 ntBASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCUBE3Q8IX30 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SCUBE3Q8IX30 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms