Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.85■□□□□ 0.77
COL4A5P29400 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 RPF1-202ENST00000370656 724 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A5P29400 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A5P29400 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A5P29400 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL4A5P29400 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A5P29400 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 AC133552.6-201ENST00000613406 534 ntBASIC19.84■□□□□ 0.77
COL4A5P29400 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A5P29400 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A5P29400 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
COL4A5P29400 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A5P29400 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A5P29400 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A5P29400 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A5P29400 LINC02012-201ENST00000608206 1725 ntBASIC19.84■□□□□ 0.77
COL4A5P29400 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A5P29400 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A5P29400 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC19.84■□□□□ 0.77
COL4A5P29400 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A5P29400 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A5P29400 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A5P29400 KRT8P39-201ENST00000396270 1433 ntBASIC19.83■□□□□ 0.77
COL4A5P29400 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC19.83■□□□□ 0.77
COL4A5P29400 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
COL4A5P29400 AL589702.1-201ENST00000641229 1509 ntBASIC19.83■□□□□ 0.77
COL4A5P29400 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.83■□□□□ 0.77
COL4A5P29400 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A5P29400 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A5P29400 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.83■□□□□ 0.76
COL4A5P29400 MIR1908-201ENST00000410394 80 ntBASIC19.83■□□□□ 0.76
COL4A5P29400 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC19.83■□□□□ 0.76
COL4A5P29400 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A5P29400 SDHAP3-202ENST00000515467 728 ntBASIC19.83■□□□□ 0.76
COL4A5P29400 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC19.83■□□□□ 0.76
COL4A5P29400 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A5P29400 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A5P29400 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A5P29400 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
COL4A5P29400 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A5P29400 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.83■□□□□ 0.76
COL4A5P29400 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A5P29400 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
COL4A5P29400 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A5P29400 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A5P29400 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A5P29400 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.82■□□□□ 0.76
COL4A5P29400 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A5P29400 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
COL4A5P29400 RPL28-204ENST00000431533 590 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A5P29400 FADS2-205ENST00000517839 469 ntTSL 3 BASIC19.82■□□□□ 0.76
COL4A5P29400 RPL28-206ENST00000558752 671 ntTSL 3 BASIC19.82■□□□□ 0.76
COL4A5P29400 AC025048.3-201ENST00000590609 569 ntBASIC19.82■□□□□ 0.76
COL4A5P29400 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A5P29400 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 AC005702.4-201ENST00000618393 416 ntBASIC19.82■□□□□ 0.76
COL4A5P29400 GPR182-203ENST00000622922 591 ntBASIC19.82■□□□□ 0.76
COL4A5P29400 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC19.82■□□□□ 0.76
COL4A5P29400 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC19.82■□□□□ 0.76
COL4A5P29400 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
COL4A5P29400 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
COL4A5P29400 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A5P29400 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A5P29400 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A5P29400 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A5P29400 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A5P29400 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A5P29400 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
COL4A5P29400 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC19.81■□□□□ 0.76
COL4A5P29400 NEU3-203ENST00000529024 581 ntTSL 3 BASIC19.81■□□□□ 0.76
COL4A5P29400 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms