Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.16■□□□□ 0.34
COL9A1P20849 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.16■□□□□ 0.34
COL9A1P20849 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.16■□□□□ 0.34
COL9A1P20849 KRT8P19-201ENST00000551916 1455 ntBASIC17.16■□□□□ 0.34
COL9A1P20849 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.16■□□□□ 0.34
COL9A1P20849 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
COL9A1P20849 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC17.16■□□□□ 0.34
COL9A1P20849 AC092978.1-202ENST00000637590 1327 ntBASIC17.16■□□□□ 0.34
COL9A1P20849 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL9A1P20849 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
COL9A1P20849 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL9A1P20849 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL9A1P20849 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL9A1P20849 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL9A1P20849 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
COL9A1P20849 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.15■□□□□ 0.34
COL9A1P20849 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL9A1P20849 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.15■□□□□ 0.34
COL9A1P20849 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC17.15■□□□□ 0.34
COL9A1P20849 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.15■□□□□ 0.34
COL9A1P20849 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC17.15■□□□□ 0.34
COL9A1P20849 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.15■□□□□ 0.34
COL9A1P20849 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC17.15■□□□□ 0.34
COL9A1P20849 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
COL9A1P20849 C2orf69P2-201ENST00000562032 1123 ntBASIC17.15■□□□□ 0.34
COL9A1P20849 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.15■□□□□ 0.34
COL9A1P20849 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.15■□□□□ 0.34
COL9A1P20849 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.15■□□□□ 0.34
COL9A1P20849 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.15■□□□□ 0.34
COL9A1P20849 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.15■□□□□ 0.34
COL9A1P20849 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
COL9A1P20849 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.15■□□□□ 0.34
COL9A1P20849 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL9A1P20849 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.15■□□□□ 0.34
COL9A1P20849 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
COL9A1P20849 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.14■□□□□ 0.34
COL9A1P20849 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
COL9A1P20849 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.14■□□□□ 0.33
COL9A1P20849 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.14■□□□□ 0.33
COL9A1P20849 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.14■□□□□ 0.33
COL9A1P20849 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL9A1P20849 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
COL9A1P20849 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
COL9A1P20849 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.14■□□□□ 0.33
COL9A1P20849 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
COL9A1P20849 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 AC099336.1-201ENST00000417053 1171 ntBASIC17.14■□□□□ 0.33
COL9A1P20849 ARL4AP4-201ENST00000434170 518 ntBASIC17.14■□□□□ 0.33
COL9A1P20849 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.14■□□□□ 0.33
COL9A1P20849 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.14■□□□□ 0.33
COL9A1P20849 KLF2P4-201ENST00000451959 1225 ntBASIC17.14■□□□□ 0.33
COL9A1P20849 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.14■□□□□ 0.33
COL9A1P20849 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.14■□□□□ 0.33
COL9A1P20849 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.14■□□□□ 0.33
COL9A1P20849 AP000842.3-202ENST00000569238 1080 ntBASIC17.14■□□□□ 0.33
COL9A1P20849 AL844908.2-201ENST00000609461 460 ntBASIC17.14■□□□□ 0.33
COL9A1P20849 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
COL9A1P20849 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.14■□□□□ 0.33
COL9A1P20849 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL9A1P20849 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
COL9A1P20849 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
COL9A1P20849 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.13■□□□□ 0.33
COL9A1P20849 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL9A1P20849 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.13■□□□□ 0.33
COL9A1P20849 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.13■□□□□ 0.33
COL9A1P20849 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL9A1P20849 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL9A1P20849 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL9A1P20849 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL9A1P20849 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL9A1P20849 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms