Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
XRCC1P18887 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
XRCC1P18887 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
XRCC1P18887 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.82■□□□□ 0.28
XRCC1P18887 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
XRCC1P18887 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.82■□□□□ 0.28
XRCC1P18887 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.82■□□□□ 0.28
XRCC1P18887 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
XRCC1P18887 AC092171.3-201ENST00000610122 2651 ntBASIC16.82■□□□□ 0.28
XRCC1P18887 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
XRCC1P18887 RNF216P1-203ENST00000404404 2427 ntBASIC16.81■□□□□ 0.28
XRCC1P18887 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.81■□□□□ 0.28
XRCC1P18887 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
XRCC1P18887 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.81■□□□□ 0.28
XRCC1P18887 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.81■□□□□ 0.28
XRCC1P18887 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.81■□□□□ 0.28
XRCC1P18887 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
XRCC1P18887 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.81■□□□□ 0.28
XRCC1P18887 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.81■□□□□ 0.28
XRCC1P18887 KRT18P3-201ENST00000451602 1288 ntBASIC16.81■□□□□ 0.28
XRCC1P18887 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.81■□□□□ 0.28
XRCC1P18887 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 PGAM5P1-201ENST00000518923 814 ntBASIC16.81■□□□□ 0.28
XRCC1P18887 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.81■□□□□ 0.28
XRCC1P18887 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
XRCC1P18887 AC023511.2-201ENST00000618803 211 ntBASIC16.81■□□□□ 0.28
XRCC1P18887 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
XRCC1P18887 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
XRCC1P18887 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.81■□□□□ 0.28
XRCC1P18887 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.81■□□□□ 0.28
XRCC1P18887 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.81■□□□□ 0.28
XRCC1P18887 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.81■□□□□ 0.28
XRCC1P18887 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
XRCC1P18887 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.8■□□□□ 0.28
XRCC1P18887 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.8■□□□□ 0.28
XRCC1P18887 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.8■□□□□ 0.28
XRCC1P18887 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.8■□□□□ 0.28
XRCC1P18887 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
XRCC1P18887 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.8■□□□□ 0.28
XRCC1P18887 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
XRCC1P18887 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
XRCC1P18887 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
XRCC1P18887 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.8■□□□□ 0.28
XRCC1P18887 PRSS29P-201ENST00000440800 595 ntBASIC16.8■□□□□ 0.28
XRCC1P18887 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
XRCC1P18887 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.8■□□□□ 0.28
XRCC1P18887 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.8■□□□□ 0.28
XRCC1P18887 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.8■□□□□ 0.28
XRCC1P18887 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.8■□□□□ 0.28
XRCC1P18887 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.8■□□□□ 0.28
XRCC1P18887 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
XRCC1P18887 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.8■□□□□ 0.28
XRCC1P18887 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
XRCC1P18887 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.8■□□□□ 0.28
XRCC1P18887 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
XRCC1P18887 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
XRCC1P18887 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
XRCC1P18887 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
XRCC1P18887 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
XRCC1P18887 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
XRCC1P18887 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
XRCC1P18887 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms