Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HMGA1P17096 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
HMGA1P17096 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGA1P17096 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.31■□□□□ 0.36
HMGA1P17096 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
HMGA1P17096 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGA1P17096 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGA1P17096 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
HMGA1P17096 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGA1P17096 AC092580.3-201ENST00000430932 139 ntBASIC17.31■□□□□ 0.36
HMGA1P17096 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.31■□□□□ 0.36
HMGA1P17096 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGA1P17096 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.31■□□□□ 0.36
HMGA1P17096 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.31■□□□□ 0.36
HMGA1P17096 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
HMGA1P17096 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HMGA1P17096 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HMGA1P17096 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGA1P17096 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
HMGA1P17096 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
HMGA1P17096 FZD10-202ENST00000539839 3282 ntBASIC17.31■□□□□ 0.36
HMGA1P17096 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 AP001094.4-201ENST00000579008 2176 ntBASIC17.3■□□□□ 0.36
HMGA1P17096 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HMGA1P17096 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGA1P17096 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGA1P17096 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGA1P17096 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGA1P17096 RNF165-205ENST00000588679 2904 ntBASIC17.3■□□□□ 0.36
HMGA1P17096 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
HMGA1P17096 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.3■□□□□ 0.36
HMGA1P17096 BASP1P1-201ENST00000430708 665 ntBASIC17.3■□□□□ 0.36
HMGA1P17096 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGA1P17096 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 AC069120.2-201ENST00000524091 540 ntBASIC17.3■□□□□ 0.36
HMGA1P17096 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.3■□□□□ 0.36
HMGA1P17096 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGA1P17096 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.3■□□□□ 0.36
HMGA1P17096 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
HMGA1P17096 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGA1P17096 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
HMGA1P17096 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HMGA1P17096 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
HMGA1P17096 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HMGA1P17096 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGA1P17096 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGA1P17096 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
HMGA1P17096 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGA1P17096 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGA1P17096 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGA1P17096 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGA1P17096 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGA1P17096 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGA1P17096 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGA1P17096 INGX-202ENST00000489074 768 ntBASIC17.29■□□□□ 0.36
HMGA1P17096 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGA1P17096 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGA1P17096 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGA1P17096 MIR4745-201ENST00000577608 62 ntBASIC17.29■□□□□ 0.36
HMGA1P17096 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGA1P17096 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.29■□□□□ 0.36
HMGA1P17096 SPTSSB-204ENST00000617024 1292 ntBASIC17.29■□□□□ 0.36
HMGA1P17096 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGA1P17096 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGA1P17096 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGA1P17096 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGA1P17096 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGA1P17096 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGA1P17096 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGA1P17096 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms