Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC233702.5-201ENST00000584107 538 ntBASIC12.71□□□□□ -0.37
HLA-DQA1P01909 AC113410.3-201ENST00000623366 203 ntBASIC12.71□□□□□ -0.37
HLA-DQA1P01909 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DQA1P01909 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DQA1P01909 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DQA1P01909 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DQA1P01909 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 AP005117.1-202ENST00000581724 1908 ntBASIC12.7□□□□□ -0.38
HLA-DQA1P01909 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 SRI-203ENST00000419179 1307 ntTSL 2 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC12.7□□□□□ -0.38
HLA-DQA1P01909 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 FSCN1P1-201ENST00000568912 1481 ntBASIC12.7□□□□□ -0.38
HLA-DQA1P01909 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DQA1P01909 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 HARS-204ENST00000438307 1789 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 TUBB8P12-201ENST00000308911 1335 ntBASIC12.69□□□□□ -0.38
HLA-DQA1P01909 TUBB7P-202ENST00000428444 1305 ntBASIC12.69□□□□□ -0.38
HLA-DQA1P01909 TUBB8P7-204ENST00000567960 1332 ntBASIC12.69□□□□□ -0.38
HLA-DQA1P01909 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 AC010491.1-201ENST00000563101 2797 ntBASIC12.69□□□□□ -0.38
HLA-DQA1P01909 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 HLA-J-202ENST00000469281 1241 ntBASIC12.69□□□□□ -0.38
HLA-DQA1P01909 B3GAT3P1-201ENST00000471720 806 ntBASIC12.69□□□□□ -0.38
HLA-DQA1P01909 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms