Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.5■□□□□ 0.07
NKX2-2O95096 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.5■□□□□ 0.07
NKX2-2O95096 AL645728.2-201ENST00000641974 660 ntBASIC15.5■□□□□ 0.07
NKX2-2O95096 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX2-2O95096 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
NKX2-2O95096 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
NKX2-2O95096 GGT3P-204ENST00000453783 1664 ntBASIC15.5■□□□□ 0.07
NKX2-2O95096 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX2-2O95096 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.5■□□□□ 0.07
NKX2-2O95096 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX2-2O95096 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX2-2O95096 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX2-2O95096 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
NKX2-2O95096 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.5■□□□□ 0.07
NKX2-2O95096 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.5■□□□□ 0.07
NKX2-2O95096 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
NKX2-2O95096 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.49■□□□□ 0.07
NKX2-2O95096 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.49■□□□□ 0.07
NKX2-2O95096 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 GGT4P-201ENST00000623672 1708 ntBASIC15.49■□□□□ 0.07
NKX2-2O95096 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.49■□□□□ 0.07
NKX2-2O95096 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.49■□□□□ 0.07
NKX2-2O95096 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.49■□□□□ 0.07
NKX2-2O95096 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 AL031731.1-201ENST00000642131 2094 ntBASIC15.49■□□□□ 0.07
NKX2-2O95096 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.49■□□□□ 0.07
NKX2-2O95096 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
NKX2-2O95096 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
NKX2-2O95096 AC026396.1-201ENST00000419388 421 ntBASIC15.49■□□□□ 0.07
NKX2-2O95096 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.49■□□□□ 0.07
NKX2-2O95096 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.49■□□□□ 0.07
NKX2-2O95096 AL513480.1-201ENST00000451731 511 ntBASIC15.49■□□□□ 0.07
NKX2-2O95096 RPL13AP23-201ENST00000480739 586 ntBASIC15.49■□□□□ 0.07
NKX2-2O95096 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.49■□□□□ 0.07
NKX2-2O95096 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
NKX2-2O95096 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.49■□□□□ 0.07
NKX2-2O95096 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.49■□□□□ 0.07
NKX2-2O95096 BX640515.1-201ENST00000617215 977 ntBASIC15.49■□□□□ 0.07
NKX2-2O95096 AC010507.1-201ENST00000633895 436 ntBASIC15.49■□□□□ 0.07
NKX2-2O95096 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.49■□□□□ 0.07
NKX2-2O95096 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
NKX2-2O95096 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
NKX2-2O95096 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.49■□□□□ 0.07
NKX2-2O95096 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.49■□□□□ 0.07
NKX2-2O95096 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX2-2O95096 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.48■□□□□ 0.07
NKX2-2O95096 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
NKX2-2O95096 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.48■□□□□ 0.07
NKX2-2O95096 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 HMGA1P7-201ENST00000406908 502 ntBASIC15.48■□□□□ 0.07
NKX2-2O95096 AL590627.1-203ENST00000421194 1026 ntBASIC15.48■□□□□ 0.07
NKX2-2O95096 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.48■□□□□ 0.07
NKX2-2O95096 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.48■□□□□ 0.07
NKX2-2O95096 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.48■□□□□ 0.07
NKX2-2O95096 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.48■□□□□ 0.07
NKX2-2O95096 AL031432.2-201ENST00000566714 459 ntBASIC15.48■□□□□ 0.07
NKX2-2O95096 AL928711.1-201ENST00000570165 459 ntBASIC15.48■□□□□ 0.07
NKX2-2O95096 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.48■□□□□ 0.07
NKX2-2O95096 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.48■□□□□ 0.07
NKX2-2O95096 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.48■□□□□ 0.07
NKX2-2O95096 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
NKX2-2O95096 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
NKX2-2O95096 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
NKX2-2O95096 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
NKX2-2O95096 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.48■□□□□ 0.07
NKX2-2O95096 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.48■□□□□ 0.07
NKX2-2O95096 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX2-2O95096 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX2-2O95096 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.47■□□□□ 0.07
NKX2-2O95096 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
NKX2-2O95096 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
NKX2-2O95096 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.47■□□□□ 0.07
NKX2-2O95096 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.47■□□□□ 0.07
NKX2-2O95096 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
NKX2-2O95096 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms