Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CACNA1FO60840 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC20.92■□□□□ 0.94
CACNA1FO60840 RELA-227ENST00000615805 2236 ntTSL 5 BASIC20.92■□□□□ 0.94
CACNA1FO60840 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 SPCS2P4-201ENST00000436160 681 ntBASIC20.92■□□□□ 0.94
CACNA1FO60840 POU5F1P6-201ENST00000466990 990 ntBASIC20.92■□□□□ 0.94
CACNA1FO60840 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC20.92■□□□□ 0.94
CACNA1FO60840 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC20.92■□□□□ 0.94
CACNA1FO60840 RAB34-224ENST00000636513 888 ntTSL 5 BASIC20.92■□□□□ 0.94
CACNA1FO60840 AC079781.4-201ENST00000641908 219 ntBASIC20.92■□□□□ 0.94
CACNA1FO60840 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CACNA1FO60840 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CACNA1FO60840 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC20.91■□□□□ 0.94
CACNA1FO60840 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CACNA1FO60840 AC012313.1-201ENST00000593393 3059 ntBASIC20.91■□□□□ 0.94
CACNA1FO60840 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.91■□□□□ 0.94
CACNA1FO60840 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.91■□□□□ 0.94
CACNA1FO60840 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CACNA1FO60840 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CACNA1FO60840 AC092580.3-201ENST00000430932 139 ntBASIC20.91■□□□□ 0.94
CACNA1FO60840 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC20.91■□□□□ 0.94
CACNA1FO60840 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC20.91■□□□□ 0.94
CACNA1FO60840 MIR4321-201ENST00000592276 80 ntBASIC20.91■□□□□ 0.94
CACNA1FO60840 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CACNA1FO60840 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CACNA1FO60840 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CACNA1FO60840 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CACNA1FO60840 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC20.91■□□□□ 0.94
CACNA1FO60840 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CACNA1FO60840 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CACNA1FO60840 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC20.91■□□□□ 0.94
CACNA1FO60840 AD000864.1-201ENST00000624076 2295 ntBASIC20.91■□□□□ 0.94
CACNA1FO60840 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CACNA1FO60840 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CACNA1FO60840 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
CACNA1FO60840 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 AL592424.1-201ENST00000563624 1536 ntBASIC20.9■□□□□ 0.94
CACNA1FO60840 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CACNA1FO60840 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CACNA1FO60840 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CACNA1FO60840 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC20.9■□□□□ 0.94
CACNA1FO60840 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC20.9■□□□□ 0.94
CACNA1FO60840 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC20.9■□□□□ 0.94
CACNA1FO60840 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
CACNA1FO60840 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC20.9■□□□□ 0.94
CACNA1FO60840 VPS29-207ENST00000549970 818 ntTSL 3 BASIC20.9■□□□□ 0.94
CACNA1FO60840 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
CACNA1FO60840 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC20.9■□□□□ 0.94
CACNA1FO60840 AC007967.4-201ENST00000614700 386 ntBASIC20.9■□□□□ 0.94
CACNA1FO60840 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC20.9■□□□□ 0.94
CACNA1FO60840 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC20.9■□□□□ 0.94
CACNA1FO60840 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC20.9■□□□□ 0.94
CACNA1FO60840 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CACNA1FO60840 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.9■□□□□ 0.94
CACNA1FO60840 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC20.9■□□□□ 0.94
CACNA1FO60840 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CACNA1FO60840 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC20.89■□□□□ 0.93
CACNA1FO60840 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CACNA1FO60840 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC20.89■□□□□ 0.93
CACNA1FO60840 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CACNA1FO60840 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC20.89■□□□□ 0.93
CACNA1FO60840 DAD1-205ENST00000543337 501 ntTSL 3 BASIC20.89■□□□□ 0.93
CACNA1FO60840 AC026150.2-201ENST00000564693 1156 ntBASIC20.89■□□□□ 0.93
CACNA1FO60840 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC20.89■□□□□ 0.93
CACNA1FO60840 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC20.89■□□□□ 0.93
CACNA1FO60840 AC093028.1-201ENST00000622998 982 ntBASIC20.89■□□□□ 0.93
CACNA1FO60840 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.89■□□□□ 0.93
CACNA1FO60840 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC20.89■□□□□ 0.93
CACNA1FO60840 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CACNA1FO60840 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CACNA1FO60840 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CACNA1FO60840 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CACNA1FO60840 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CACNA1FO60840 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
CACNA1FO60840 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CACNA1FO60840 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC20.89■□□□□ 0.93
CACNA1FO60840 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CACNA1FO60840 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms