Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.12■□□□□ 0.33
RIPK2O43353 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
RIPK2O43353 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RIPK2O43353 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
RIPK2O43353 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RIPK2O43353 AC002310.6-201ENST00000624451 1377 ntBASIC17.12■□□□□ 0.33
RIPK2O43353 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RIPK2O43353 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RIPK2O43353 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RIPK2O43353 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RIPK2O43353 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RIPK2O43353 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RIPK2O43353 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
RIPK2O43353 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RIPK2O43353 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.11■□□□□ 0.33
RIPK2O43353 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.11■□□□□ 0.33
RIPK2O43353 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.11■□□□□ 0.33
RIPK2O43353 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
RIPK2O43353 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RIPK2O43353 AC004817.3-201ENST00000602957 2129 ntBASIC17.11■□□□□ 0.33
RIPK2O43353 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.11■□□□□ 0.33
RIPK2O43353 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 SNX33P1-201ENST00000592116 1762 ntBASIC17.11■□□□□ 0.33
RIPK2O43353 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.11■□□□□ 0.33
RIPK2O43353 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.11■□□□□ 0.33
RIPK2O43353 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.11■□□□□ 0.33
RIPK2O43353 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.11■□□□□ 0.33
RIPK2O43353 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.11■□□□□ 0.33
RIPK2O43353 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.11■□□□□ 0.33
RIPK2O43353 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.11■□□□□ 0.33
RIPK2O43353 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.11■□□□□ 0.33
RIPK2O43353 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.11■□□□□ 0.33
RIPK2O43353 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RIPK2O43353 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.11■□□□□ 0.33
RIPK2O43353 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.11■□□□□ 0.33
RIPK2O43353 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RIPK2O43353 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.11■□□□□ 0.33
RIPK2O43353 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RIPK2O43353 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
RIPK2O43353 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RIPK2O43353 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
RIPK2O43353 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
RIPK2O43353 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RIPK2O43353 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.1■□□□□ 0.33
RIPK2O43353 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 AK4P3-201ENST00000418260 669 ntBASIC17.1■□□□□ 0.33
RIPK2O43353 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 AC092647.4-201ENST00000457211 535 ntBASIC17.1■□□□□ 0.33
RIPK2O43353 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.1■□□□□ 0.33
RIPK2O43353 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.1■□□□□ 0.33
RIPK2O43353 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.1■□□□□ 0.33
RIPK2O43353 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.1■□□□□ 0.33
RIPK2O43353 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.1■□□□□ 0.33
RIPK2O43353 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.1■□□□□ 0.33
RIPK2O43353 AP005901.3-202ENST00000581653 237 ntBASIC17.1■□□□□ 0.33
RIPK2O43353 AC012306.2-201ENST00000609350 630 ntBASIC17.1■□□□□ 0.33
RIPK2O43353 TSPY26P-202ENST00000565928 3884 ntBASIC17.1■□□□□ 0.33
RIPK2O43353 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RIPK2O43353 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RIPK2O43353 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
RIPK2O43353 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.1■□□□□ 0.33
RIPK2O43353 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RIPK2O43353 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms