Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 EMBP1-201ENST00000458200 901 ntBASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 AC105339.3-201ENST00000560043 636 ntBASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 AC008667.4-201ENST00000607370 168 ntBASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 HLA-A-202ENST00000376806 1854 ntBASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS9D1Q9Y2B5 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 PCDHA14-201ENST00000506751 2298 ntBASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 AL603756.1-201ENST00000606511 2163 ntBASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 AC073621.1-201ENST00000392730 636 ntBASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 AL450487.1-201ENST00000426799 995 ntBASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 AC018712.1-201ENST00000455767 687 ntBASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 MPDU1-223ENST00000582151 728 ntBASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 AC005593.1-201ENST00000624894 515 ntBASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS9D1Q9Y2B5 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS9D1Q9Y2B5 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 AC005412.3-201ENST00000580309 715 ntBASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 AL356488.2-201ENST00000602755 427 ntBASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 REXO1L3P-201ENST00000622202 1288 ntBASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 AP001350.2-201ENST00000625104 1094 ntBASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms