Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC39Q9UFE4 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 NUS1P2-201ENST00000417358 873 ntBASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 MIR5100-201ENST00000579544 119 ntBASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CCDC39Q9UFE4 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 PMPCAP1-201ENST00000508114 1576 ntBASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC39Q9UFE4 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 AC104640.1-201ENST00000562617 2109 ntBASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC39Q9UFE4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms