Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL20A1Q9P218 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL20A1Q9P218 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL20A1Q9P218 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL20A1Q9P218 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL20A1Q9P218 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL20A1Q9P218 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL20A1Q9P218 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.91■□□□□ 0.62
COL20A1Q9P218 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL20A1Q9P218 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL20A1Q9P218 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL20A1Q9P218 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 AC005915.1-201ENST00000624912 2018 ntBASIC18.9■□□□□ 0.62
COL20A1Q9P218 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 AC067863.1-201ENST00000494933 530 ntBASIC18.9■□□□□ 0.62
COL20A1Q9P218 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.9■□□□□ 0.62
COL20A1Q9P218 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL20A1Q9P218 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL20A1Q9P218 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 AC073439.1-201ENST00000624121 1774 ntBASIC18.89■□□□□ 0.61
COL20A1Q9P218 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.89■□□□□ 0.61
COL20A1Q9P218 KLF2P3-201ENST00000451977 1087 ntBASIC18.89■□□□□ 0.61
COL20A1Q9P218 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 PRYP6-201ENST00000514804 343 ntBASIC18.89■□□□□ 0.61
COL20A1Q9P218 AC105233.2-201ENST00000523697 349 ntBASIC18.89■□□□□ 0.61
COL20A1Q9P218 AF228730.5-201ENST00000530288 346 ntBASIC18.89■□□□□ 0.61
COL20A1Q9P218 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 INO80C-206ENST00000586489 594 ntTSL 3 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 MIR6080-201ENST00000617359 66 ntBASIC18.89■□□□□ 0.61
COL20A1Q9P218 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL20A1Q9P218 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.89■□□□□ 0.61
COL20A1Q9P218 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms