Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.76■□□□□ 0.27
TREX1Q9NSU2 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TREX1Q9NSU2 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.76■□□□□ 0.27
TREX1Q9NSU2 AC018695.7-201ENST00000624587 2492 ntBASIC16.76■□□□□ 0.27
TREX1Q9NSU2 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TREX1Q9NSU2 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TREX1Q9NSU2 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.76■□□□□ 0.27
TREX1Q9NSU2 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
TREX1Q9NSU2 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TREX1Q9NSU2 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TREX1Q9NSU2 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.76■□□□□ 0.27
TREX1Q9NSU2 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TREX1Q9NSU2 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.76■□□□□ 0.27
TREX1Q9NSU2 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 PRSS29P-201ENST00000440800 595 ntBASIC16.75■□□□□ 0.27
TREX1Q9NSU2 FAM185BP-201ENST00000443595 716 ntBASIC16.75■□□□□ 0.27
TREX1Q9NSU2 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TREX1Q9NSU2 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 AC098831.1-202ENST00000438821 336 ntBASIC16.74■□□□□ 0.27
TREX1Q9NSU2 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 SLC25A6P4-201ENST00000586535 553 ntBASIC16.74■□□□□ 0.27
TREX1Q9NSU2 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.74■□□□□ 0.27
TREX1Q9NSU2 AC116407.3-201ENST00000623905 1129 ntBASIC16.74■□□□□ 0.27
TREX1Q9NSU2 AP001350.2-201ENST00000625104 1094 ntBASIC16.74■□□□□ 0.27
TREX1Q9NSU2 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.74■□□□□ 0.27
TREX1Q9NSU2 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TREX1Q9NSU2 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms