Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
TM9SF3Q9HD45 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TM9SF3Q9HD45 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TM9SF3Q9HD45 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TM9SF3Q9HD45 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TM9SF3Q9HD45 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.84■□□□□ 0.29
TM9SF3Q9HD45 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TM9SF3Q9HD45 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.29
TM9SF3Q9HD45 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 AC015911.4-201ENST00000588022 1070 ntBASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 Z92544.3-201ENST00000624747 417 ntBASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 AL139384.1-201ENST00000612143 3047 ntBASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TM9SF3Q9HD45 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 AL138688.1-201ENST00000624851 1594 ntBASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 AC067863.1-201ENST00000494933 530 ntBASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 AC243562.1-201ENST00000560672 389 ntBASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 AL135744.1-201ENST00000565098 629 ntBASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 RARRES2P8-201ENST00000566335 367 ntBASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 AC022211.2-201ENST00000585075 2527 ntBASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 AL355312.1-201ENST00000407115 2176 ntBASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TM9SF3Q9HD45 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TM9SF3Q9HD45 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms