Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 AC092865.6-201ENST00000642101 219 ntBASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 AL353732.1-201ENST00000569618 1459 ntBASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 AC092068.3-201ENST00000587894 2016 ntBASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 AC091167.2-201ENST00000579581 588 ntBASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 MIR4515-201ENST00000584082 81 ntBASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 AL513190.1-201ENST00000621254 727 ntBASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 AL645728.2-201ENST00000641974 660 ntBASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM39Q9HCM9 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 PDPK2P-202ENST00000562415 1191 ntBASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 MTDHP5-201ENST00000598980 586 ntBASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM39Q9HCM9 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM39Q9HCM9 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms