Protein–RNA interactions for Protein: Q93084

ATP2A3, Sarcoplasmic/endoplasmic reticulum calcium ATPase 3, humanhuman

Predictions only

Length 1,043 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2A3Q93084 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
ATP2A3Q93084 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
ATP2A3Q93084 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
ATP2A3Q93084 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 AC022211.2-201ENST00000585075 2527 ntBASIC17.77■□□□□ 0.44
ATP2A3Q93084 AL135999.2-201ENST00000622438 1686 ntBASIC17.77■□□□□ 0.44
ATP2A3Q93084 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
ATP2A3Q93084 KRT18P28-201ENST00000453838 1332 ntBASIC17.77■□□□□ 0.44
ATP2A3Q93084 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.77■□□□□ 0.44
ATP2A3Q93084 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
ATP2A3Q93084 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.77■□□□□ 0.44
ATP2A3Q93084 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 CEND1P1-201ENST00000451006 455 ntBASIC17.77■□□□□ 0.44
ATP2A3Q93084 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATP2A3Q93084 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.77■□□□□ 0.44
ATP2A3Q93084 AC027796.2-201ENST00000575326 344 ntBASIC17.77■□□□□ 0.44
ATP2A3Q93084 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.77■□□□□ 0.44
ATP2A3Q93084 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.77■□□□□ 0.44
ATP2A3Q93084 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
ATP2A3Q93084 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
ATP2A3Q93084 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
ATP2A3Q93084 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.77■□□□□ 0.43
ATP2A3Q93084 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ATP2A3Q93084 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
ATP2A3Q93084 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
ATP2A3Q93084 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.76■□□□□ 0.43
ATP2A3Q93084 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 AC025580.3-201ENST00000617932 1424 ntBASIC17.76■□□□□ 0.43
ATP2A3Q93084 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 CNN2P11-201ENST00000429351 262 ntBASIC17.76■□□□□ 0.43
ATP2A3Q93084 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 AC074386.1-202ENST00000463561 864 ntBASIC17.76■□□□□ 0.43
ATP2A3Q93084 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 CXCL1P1-201ENST00000502804 216 ntBASIC17.76■□□□□ 0.43
ATP2A3Q93084 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 AL355385.1-201ENST00000606123 409 ntBASIC17.76■□□□□ 0.43
ATP2A3Q93084 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
ATP2A3Q93084 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATP2A3Q93084 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
ATP2A3Q93084 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
ATP2A3Q93084 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 NKILA-202ENST00000614771 2598 ntBASIC17.75■□□□□ 0.43
ATP2A3Q93084 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 METTL21AP1-201ENST00000438852 635 ntBASIC17.75■□□□□ 0.43
ATP2A3Q93084 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.75■□□□□ 0.43
ATP2A3Q93084 ACTG1P14-201ENST00000446382 1122 ntBASIC17.75■□□□□ 0.43
ATP2A3Q93084 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.75■□□□□ 0.43
ATP2A3Q93084 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.75■□□□□ 0.43
ATP2A3Q93084 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
ATP2A3Q93084 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.75■□□□□ 0.43
ATP2A3Q93084 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATP2A3Q93084 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms