Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 BX276092.5-203ENST00000456199 560 ntBASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 AC002558.1-201ENST00000488906 803 ntBASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 AL121672.3-201ENST00000608644 468 ntBASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 BCL10-202ENST00000620248 774 ntTSL 5 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 PC-208ENST00000529047 1607 ntTSL 3 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF540Q8NDQ6 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 DBET-201ENST00000630918 3363 ntBASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 AL450487.1-201ENST00000426799 995 ntBASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 TPM4P1-201ENST00000436100 807 ntBASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 AC011498.5-201ENST00000592027 486 ntBASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.67■□□□□ 0.1
ZNF540Q8NDQ6 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 AC112698.1-201ENST00000510299 916 ntBASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms