Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AD000864.1-201ENST00000624076 2295 ntBASIC15.65■□□□□ 0.1
BEST3Q8N1M1 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 KRT18P28-201ENST00000453838 1332 ntBASIC15.65■□□□□ 0.1
BEST3Q8N1M1 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
BEST3Q8N1M1 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 METTL21AP1-201ENST00000438852 635 ntBASIC15.64■□□□□ 0.09
BEST3Q8N1M1 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 AL138688.1-201ENST00000624851 1594 ntBASIC15.64■□□□□ 0.09
BEST3Q8N1M1 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
BEST3Q8N1M1 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 AC093525.9-201ENST00000624961 1746 ntBASIC15.63■□□□□ 0.09
BEST3Q8N1M1 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 AC112191.1-201ENST00000523689 701 ntBASIC15.63■□□□□ 0.09
BEST3Q8N1M1 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 REXO1L3P-201ENST00000622202 1288 ntBASIC15.63■□□□□ 0.09
BEST3Q8N1M1 AL645728.2-201ENST00000641974 660 ntBASIC15.63■□□□□ 0.09
BEST3Q8N1M1 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.63■□□□□ 0.09
BEST3Q8N1M1 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.62■□□□□ 0.09
BEST3Q8N1M1 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms