Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 AC026366.1-201ENST00000488803 879 ntBASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 GLRB-205ENST00000512619 728 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 KRT18P6-201ENST00000555540 1265 ntBASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 HTR7P1-201ENST00000538670 1336 ntBASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 SNCG-201ENST00000348795 684 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 AC026396.1-201ENST00000419388 421 ntBASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 TBCB-214ENST00000629269 413 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28AQ8IWP9 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 AC006538.1-201ENST00000567905 1585 ntBASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms