Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 AC025580.3-201ENST00000617932 1424 ntBASIC16.44■□□□□ 0.22
VRK3Q8IV63 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VRK3Q8IV63 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VRK3Q8IV63 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VRK3Q8IV63 HCG4-201ENST00000418983 998 ntBASIC16.43■□□□□ 0.22
VRK3Q8IV63 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VRK3Q8IV63 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 POLD2P1-201ENST00000511220 997 ntBASIC16.43■□□□□ 0.22
VRK3Q8IV63 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 AL513190.1-201ENST00000621254 727 ntBASIC16.43■□□□□ 0.22
VRK3Q8IV63 AC092865.6-201ENST00000642101 219 ntBASIC16.43■□□□□ 0.22
VRK3Q8IV63 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VRK3Q8IV63 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
VRK3Q8IV63 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 BCAR1-209ENST00000546196 1340 ntBASIC16.43■□□□□ 0.22
VRK3Q8IV63 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
VRK3Q8IV63 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VRK3Q8IV63 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 AL512652.2-201ENST00000625156 1716 ntBASIC16.42■□□□□ 0.22
VRK3Q8IV63 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 AL591424.1-201ENST00000442569 1213 ntBASIC16.42■□□□□ 0.22
VRK3Q8IV63 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 KRT19P2-202ENST00000557173 1012 ntBASIC16.42■□□□□ 0.22
VRK3Q8IV63 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 AC006538.1-201ENST00000567905 1585 ntBASIC16.42■□□□□ 0.22
VRK3Q8IV63 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VRK3Q8IV63 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.42■□□□□ 0.22
VRK3Q8IV63 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms