Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 KRT89P-201ENST00000620027 1478 ntBASIC16.22■□□□□ 0.19
PPP4R4Q6NUP7 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.22■□□□□ 0.19
PPP4R4Q6NUP7 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PPP4R4Q6NUP7 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.22■□□□□ 0.19
PPP4R4Q6NUP7 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PPP4R4Q6NUP7 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 AC092364.2-201ENST00000596710 2692 ntBASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 PRELID1P1-202ENST00000567272 903 ntBASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
PPP4R4Q6NUP7 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.21■□□□□ 0.18
PPP4R4Q6NUP7 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
PPP4R4Q6NUP7 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
PPP4R4Q6NUP7 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
PPP4R4Q6NUP7 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 AC104640.1-201ENST00000562617 2109 ntBASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 AC011840.4-201ENST00000578471 627 ntBASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PPP4R4Q6NUP7 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PPP4R4Q6NUP7 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms