Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC19.4■□□□□ 0.7
CTCFP49711 AC093525.8-201ENST00000624099 1342 ntBASIC19.4■□□□□ 0.7
CTCFP49711 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.4■□□□□ 0.7
CTCFP49711 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.4■□□□□ 0.7
CTCFP49711 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CTCFP49711 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.4■□□□□ 0.7
CTCFP49711 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.4■□□□□ 0.7
CTCFP49711 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC19.39■□□□□ 0.7
CTCFP49711 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.39■□□□□ 0.7
CTCFP49711 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CTCFP49711 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.39■□□□□ 0.7
CTCFP49711 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CTCFP49711 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
CTCFP49711 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CTCFP49711 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.39■□□□□ 0.7
CTCFP49711 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
CTCFP49711 BICD1-207ENST00000551848 1962 ntBASIC19.39■□□□□ 0.7
CTCFP49711 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.39■□□□□ 0.69
CTCFP49711 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
CTCFP49711 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.39■□□□□ 0.69
CTCFP49711 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CTCFP49711 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC19.39■□□□□ 0.69
CTCFP49711 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CTCFP49711 MEP1AP4-201ENST00000423244 1087 ntBASIC19.39■□□□□ 0.69
CTCFP49711 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC19.39■□□□□ 0.69
CTCFP49711 KLF2P4-201ENST00000451959 1225 ntBASIC19.39■□□□□ 0.69
CTCFP49711 MBP-227ENST00000526111 581 ntTSL 4 BASIC19.39■□□□□ 0.69
CTCFP49711 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CTCFP49711 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC19.39■□□□□ 0.69
CTCFP49711 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.39■□□□□ 0.69
CTCFP49711 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC19.39■□□□□ 0.69
CTCFP49711 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
CTCFP49711 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CTCFP49711 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CTCFP49711 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
CTCFP49711 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CTCFP49711 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
CTCFP49711 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CTCFP49711 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.38■□□□□ 0.69
CTCFP49711 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTCFP49711 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CTCFP49711 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTCFP49711 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.38■□□□□ 0.69
CTCFP49711 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CTCFP49711 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTCFP49711 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC19.38■□□□□ 0.69
CTCFP49711 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTCFP49711 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CTCFP49711 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
CTCFP49711 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CTCFP49711 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTCFP49711 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC19.38■□□□□ 0.69
CTCFP49711 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CTCFP49711 FAM21FP-201ENST00000426241 1131 ntBASIC19.38■□□□□ 0.69
CTCFP49711 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTCFP49711 AC253536.4-201ENST00000440539 267 ntBASIC19.38■□□□□ 0.69
CTCFP49711 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CTCFP49711 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC19.38■□□□□ 0.69
CTCFP49711 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC19.38■□□□□ 0.69
CTCFP49711 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.38■□□□□ 0.69
CTCFP49711 FADS2-212ENST00000522639 360 ntTSL 5 BASIC19.38■□□□□ 0.69
CTCFP49711 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC19.38■□□□□ 0.69
CTCFP49711 FADS2-215ENST00000574708 385 ntTSL 3 BASIC19.38■□□□□ 0.69
CTCFP49711 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC19.38■□□□□ 0.69
CTCFP49711 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC19.38■□□□□ 0.69
CTCFP49711 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CTCFP49711 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
CTCFP49711 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CTCFP49711 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.37■□□□□ 0.69
CTCFP49711 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.37■□□□□ 0.69
CTCFP49711 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
CTCFP49711 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 AC105233.2-201ENST00000523697 349 ntBASIC19.37■□□□□ 0.69
CTCFP49711 AF228730.5-201ENST00000530288 346 ntBASIC19.37■□□□□ 0.69
CTCFP49711 AC123567.1-201ENST00000548294 1261 ntBASIC19.37■□□□□ 0.69
CTCFP49711 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC19.37■□□□□ 0.69
CTCFP49711 LITAF-210ENST00000571976 548 ntTSL 2 BASIC19.37■□□□□ 0.69
CTCFP49711 LITAF-214ENST00000574703 486 ntTSL 2 BASIC19.37■□□□□ 0.69
CTCFP49711 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CTCFP49711 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.37■□□□□ 0.69
CTCFP49711 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CTCFP49711 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
CTCFP49711 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms