Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.52■□□□□ 0.23
SHMT2P34897 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SHMT2P34897 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.52■□□□□ 0.23
SHMT2P34897 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
SHMT2P34897 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.52■□□□□ 0.23
SHMT2P34897 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
SHMT2P34897 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
SHMT2P34897 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.52■□□□□ 0.23
SHMT2P34897 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
SHMT2P34897 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.51■□□□□ 0.23
SHMT2P34897 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.51■□□□□ 0.23
SHMT2P34897 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.51■□□□□ 0.23
SHMT2P34897 AC129492.6-201ENST00000611383 1305 ntBASIC16.51■□□□□ 0.23
SHMT2P34897 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SHMT2P34897 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.51■□□□□ 0.23
SHMT2P34897 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.51■□□□□ 0.23
SHMT2P34897 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
SHMT2P34897 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.51■□□□□ 0.23
SHMT2P34897 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.51■□□□□ 0.23
SHMT2P34897 HCG4B-203ENST00000450128 991 ntBASIC16.51■□□□□ 0.23
SHMT2P34897 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.51■□□□□ 0.23
SHMT2P34897 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.51■□□□□ 0.23
SHMT2P34897 AC124947.2-201ENST00000547118 1133 ntBASIC16.51■□□□□ 0.23
SHMT2P34897 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SHMT2P34897 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.51■□□□□ 0.23
SHMT2P34897 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.51■□□□□ 0.23
SHMT2P34897 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.51■□□□□ 0.23
SHMT2P34897 LINC02199-201ENST00000506655 2702 ntBASIC16.51■□□□□ 0.23
SHMT2P34897 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
SHMT2P34897 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHMT2P34897 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
SHMT2P34897 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SHMT2P34897 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.5■□□□□ 0.23
SHMT2P34897 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SHMT2P34897 MIR940-201ENST00000401276 94 ntBASIC16.5■□□□□ 0.23
SHMT2P34897 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 SLC25A6P2-201ENST00000497974 877 ntBASIC16.5■□□□□ 0.23
SHMT2P34897 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.5■□□□□ 0.23
SHMT2P34897 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SHMT2P34897 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.5■□□□□ 0.23
SHMT2P34897 OR7E47P-204ENST00000575924 449 ntBASIC16.5■□□□□ 0.23
SHMT2P34897 AL671883.3-201ENST00000603274 991 ntBASIC16.5■□□□□ 0.23
SHMT2P34897 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
SHMT2P34897 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
SHMT2P34897 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.5■□□□□ 0.23
SHMT2P34897 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.5■□□□□ 0.23
SHMT2P34897 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.5■□□□□ 0.23
SHMT2P34897 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
SHMT2P34897 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.5■□□□□ 0.23
SHMT2P34897 AC002310.6-201ENST00000624451 1377 ntBASIC16.5■□□□□ 0.23
SHMT2P34897 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 FRMD8P1-201ENST00000440433 1524 ntBASIC16.5■□□□□ 0.23
SHMT2P34897 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.5■□□□□ 0.23
SHMT2P34897 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHMT2P34897 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
SHMT2P34897 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.49■□□□□ 0.23
SHMT2P34897 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.49■□□□□ 0.23
SHMT2P34897 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.49■□□□□ 0.23
SHMT2P34897 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.49■□□□□ 0.23
SHMT2P34897 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.49■□□□□ 0.23
SHMT2P34897 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
SHMT2P34897 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.49■□□□□ 0.23
SHMT2P34897 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
SHMT2P34897 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SHMT2P34897 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms