Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 ACE-204ENST00000428043 5120 ntTSL 2 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 AC046158.3-201ENST00000624947 2558 ntBASIC12.89□□□□□ -0.35
HLA-DMBP28068 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 AC004870.1-201ENST00000315132 882 ntBASIC12.89□□□□□ -0.35
HLA-DMBP28068 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 NUS1P2-201ENST00000417358 873 ntBASIC12.89□□□□□ -0.35
HLA-DMBP28068 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 AL020989.1-201ENST00000422979 469 ntBASIC12.89□□□□□ -0.35
HLA-DMBP28068 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 SIGLEC30P-201ENST00000455569 941 ntBASIC12.89□□□□□ -0.35
HLA-DMBP28068 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 RN7SL510P-201ENST00000581311 263 ntBASIC12.89□□□□□ -0.35
HLA-DMBP28068 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 AC114341.1-201ENST00000618070 349 ntBASIC12.89□□□□□ -0.35
HLA-DMBP28068 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 AP000867.4-201ENST00000641616 219 ntBASIC12.89□□□□□ -0.35
HLA-DMBP28068 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HLA-DMBP28068 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
HLA-DMBP28068 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 SPDYE21P-201ENST00000413323 827 ntBASIC12.88□□□□□ -0.35
HLA-DMBP28068 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 AC026396.1-201ENST00000419388 421 ntBASIC12.88□□□□□ -0.35
HLA-DMBP28068 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 CYB561-217ENST00000582997 877 ntTSL 5 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 IFNL4P1-201ENST00000607083 540 ntBASIC12.88□□□□□ -0.35
HLA-DMBP28068 AL732292.2-201ENST00000609649 430 ntBASIC12.88□□□□□ -0.35
HLA-DMBP28068 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC12.88□□□□□ -0.35
HLA-DMBP28068 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HLA-DMBP28068 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms