Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RFX1P22670 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.35■□□□□ 0.53
RFX1P22670 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX1P22670 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.35■□□□□ 0.53
RFX1P22670 AC009947.1-201ENST00000444350 727 ntBASIC18.35■□□□□ 0.53
RFX1P22670 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
RFX1P22670 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
RFX1P22670 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX1P22670 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.35■□□□□ 0.53
RFX1P22670 PGM5P2-202ENST00000637225 1043 ntBASIC18.35■□□□□ 0.53
RFX1P22670 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
RFX1P22670 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RFX1P22670 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX1P22670 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RFX1P22670 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.35■□□□□ 0.53
RFX1P22670 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
RFX1P22670 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
RFX1P22670 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.35■□□□□ 0.53
RFX1P22670 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX1P22670 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RFX1P22670 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
RFX1P22670 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX1P22670 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.35■□□□□ 0.53
RFX1P22670 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.34■□□□□ 0.53
RFX1P22670 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX1P22670 RNF216P1-203ENST00000404404 2427 ntBASIC18.34■□□□□ 0.53
RFX1P22670 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX1P22670 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFX1P22670 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX1P22670 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX1P22670 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX1P22670 KRT8P49-201ENST00000604166 1432 ntBASIC18.34■□□□□ 0.53
RFX1P22670 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX1P22670 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
RFX1P22670 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
RFX1P22670 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX1P22670 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
RFX1P22670 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX1P22670 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX1P22670 HTR5BP-201ENST00000430851 1154 ntBASIC18.34■□□□□ 0.53
RFX1P22670 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.34■□□□□ 0.53
RFX1P22670 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
RFX1P22670 AC108751.1-201ENST00000490852 363 ntBASIC18.34■□□□□ 0.53
RFX1P22670 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.34■□□□□ 0.53
RFX1P22670 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX1P22670 AC006557.2-201ENST00000592985 1240 ntBASIC18.34■□□□□ 0.53
RFX1P22670 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.34■□□□□ 0.53
RFX1P22670 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFX1P22670 AC124067.4-201ENST00000519691 2379 ntBASIC18.34■□□□□ 0.53
RFX1P22670 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.34■□□□□ 0.53
RFX1P22670 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
RFX1P22670 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
RFX1P22670 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX1P22670 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
RFX1P22670 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFX1P22670 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RFX1P22670 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFX1P22670 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFX1P22670 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFX1P22670 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFX1P22670 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.33■□□□□ 0.53
RFX1P22670 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.33■□□□□ 0.52
RFX1P22670 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX1P22670 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.33■□□□□ 0.52
RFX1P22670 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.33■□□□□ 0.52
RFX1P22670 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.33■□□□□ 0.52
RFX1P22670 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.33■□□□□ 0.52
RFX1P22670 RFPL4AP1-201ENST00000530883 850 ntBASIC18.33■□□□□ 0.52
RFX1P22670 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.33■□□□□ 0.52
RFX1P22670 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.33■□□□□ 0.52
RFX1P22670 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.33■□□□□ 0.52
RFX1P22670 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.33■□□□□ 0.52
RFX1P22670 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.33■□□□□ 0.52
RFX1P22670 AC011467.4-201ENST00000594891 528 ntBASIC18.33■□□□□ 0.52
RFX1P22670 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RFX1P22670 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.33■□□□□ 0.52
RFX1P22670 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.33■□□□□ 0.52
RFX1P22670 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.33■□□□□ 0.52
RFX1P22670 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RFX1P22670 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX1P22670 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX1P22670 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX1P22670 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RFX1P22670 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.33■□□□□ 0.52
RFX1P22670 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
RFX1P22670 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX1P22670 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
RFX1P22670 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RFX1P22670 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms