Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.63■□□□□ 0.57
TPM1P09493 AC009533.2-201ENST00000543664 586 ntBASIC18.63■□□□□ 0.57
TPM1P09493 AC090616.6-201ENST00000582640 721 ntBASIC18.63■□□□□ 0.57
TPM1P09493 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC18.63■□□□□ 0.57
TPM1P09493 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TPM1P09493 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TPM1P09493 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.63■□□□□ 0.57
TPM1P09493 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
TPM1P09493 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.62■□□□□ 0.57
TPM1P09493 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
TPM1P09493 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
TPM1P09493 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
TPM1P09493 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.62■□□□□ 0.57
TPM1P09493 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.62■□□□□ 0.57
TPM1P09493 AL596275.1-201ENST00000423464 877 ntBASIC18.62■□□□□ 0.57
TPM1P09493 TSPY22P-201ENST00000427496 604 ntBASIC18.62■□□□□ 0.57
TPM1P09493 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.62■□□□□ 0.57
TPM1P09493 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.62■□□□□ 0.57
TPM1P09493 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.62■□□□□ 0.57
TPM1P09493 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.62■□□□□ 0.57
TPM1P09493 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 AC005336.2-201ENST00000593183 939 ntBASIC18.62■□□□□ 0.57
TPM1P09493 AL353801.3-201ENST00000609898 542 ntBASIC18.62■□□□□ 0.57
TPM1P09493 IGHV3-41-201ENST00000613121 348 ntBASIC18.62■□□□□ 0.57
TPM1P09493 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
TPM1P09493 HYMAI.1-201ENST00000620949 238 ntBASIC18.62■□□□□ 0.57
TPM1P09493 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.62■□□□□ 0.57
TPM1P09493 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.62■□□□□ 0.57
TPM1P09493 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.62■□□□□ 0.57
TPM1P09493 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.62■□□□□ 0.57
TPM1P09493 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TPM1P09493 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.62■□□□□ 0.57
TPM1P09493 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TPM1P09493 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 AL645728.1-201ENST00000366221 2101 ntBASIC18.61■□□□□ 0.57
TPM1P09493 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.61■□□□□ 0.57
TPM1P09493 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
TPM1P09493 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
TPM1P09493 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.61■□□□□ 0.57
TPM1P09493 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.61■□□□□ 0.57
TPM1P09493 AK4P3-201ENST00000418260 669 ntBASIC18.61■□□□□ 0.57
TPM1P09493 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TPM1P09493 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.61■□□□□ 0.57
TPM1P09493 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.61■□□□□ 0.57
TPM1P09493 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.61■□□□□ 0.57
TPM1P09493 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.61■□□□□ 0.57
TPM1P09493 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TPM1P09493 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.61■□□□□ 0.57
TPM1P09493 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TPM1P09493 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TPM1P09493 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.61■□□□□ 0.57
TPM1P09493 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.61■□□□□ 0.57
TPM1P09493 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TPM1P09493 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TPM1P09493 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms