Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 OR7E47P-204ENST00000575924 449 ntBASIC17.66■□□□□ 0.42
APOEP02649 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.66■□□□□ 0.42
APOEP02649 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
APOEP02649 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.66■□□□□ 0.42
APOEP02649 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.66■□□□□ 0.42
APOEP02649 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.66■□□□□ 0.42
APOEP02649 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.66■□□□□ 0.42
APOEP02649 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
APOEP02649 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
APOEP02649 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.65■□□□□ 0.42
APOEP02649 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.65■□□□□ 0.42
APOEP02649 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.65■□□□□ 0.42
APOEP02649 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.65■□□□□ 0.42
APOEP02649 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
APOEP02649 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.65■□□□□ 0.42
APOEP02649 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.65■□□□□ 0.42
APOEP02649 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 AL671883.3-201ENST00000603274 991 ntBASIC17.65■□□□□ 0.42
APOEP02649 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
APOEP02649 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
APOEP02649 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.65■□□□□ 0.42
APOEP02649 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
APOEP02649 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
APOEP02649 AL021920.2-201ENST00000624828 1351 ntBASIC17.65■□□□□ 0.42
APOEP02649 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
APOEP02649 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
APOEP02649 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
APOEP02649 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
APOEP02649 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
APOEP02649 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
APOEP02649 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
APOEP02649 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.64■□□□□ 0.41
APOEP02649 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.64■□□□□ 0.41
APOEP02649 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
APOEP02649 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.64■□□□□ 0.41
APOEP02649 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.64■□□□□ 0.41
APOEP02649 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.64■□□□□ 0.41
APOEP02649 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
APOEP02649 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.64■□□□□ 0.41
APOEP02649 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
APOEP02649 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.64■□□□□ 0.41
APOEP02649 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.64■□□□□ 0.41
APOEP02649 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.64■□□□□ 0.41
APOEP02649 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.64■□□□□ 0.41
APOEP02649 CXCL1P1-201ENST00000502804 216 ntBASIC17.64■□□□□ 0.41
APOEP02649 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.64■□□□□ 0.41
APOEP02649 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.64■□□□□ 0.41
APOEP02649 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.64■□□□□ 0.41
APOEP02649 PMS2P7-201ENST00000506558 1336 ntBASIC17.64■□□□□ 0.41
APOEP02649 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.64■□□□□ 0.41
APOEP02649 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.64■□□□□ 0.41
APOEP02649 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOEP02649 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
APOEP02649 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms