Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL3A1P02461 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC22■■□□□ 1.11
COL3A1P02461 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC22■■□□□ 1.11
COL3A1P02461 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC22■■□□□ 1.11
COL3A1P02461 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC22■■□□□ 1.11
COL3A1P02461 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC22■■□□□ 1.11
COL3A1P02461 AC020765.3-201ENST00000613051 740 ntBASIC22■■□□□ 1.11
COL3A1P02461 MIR6080-201ENST00000617359 66 ntBASIC22■■□□□ 1.11
COL3A1P02461 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL3A1P02461 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC22■■□□□ 1.11
COL3A1P02461 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
COL3A1P02461 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC22■■□□□ 1.11
COL3A1P02461 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC22■■□□□ 1.11
COL3A1P02461 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC22■■□□□ 1.11
COL3A1P02461 PCGF3-213ENST00000620529 1899 ntBASIC22■■□□□ 1.11
COL3A1P02461 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC22■■□□□ 1.11
COL3A1P02461 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC21.99■■□□□ 1.11
COL3A1P02461 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC21.99■■□□□ 1.11
COL3A1P02461 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC21.99■■□□□ 1.11
COL3A1P02461 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
COL3A1P02461 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC21.99■■□□□ 1.11
COL3A1P02461 AC093512.1-201ENST00000617969 520 ntBASIC21.99■■□□□ 1.11
COL3A1P02461 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC21.99■■□□□ 1.11
COL3A1P02461 AC011676.5-201ENST00000624864 2660 ntBASIC21.99■■□□□ 1.11
COL3A1P02461 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC21.99■■□□□ 1.11
COL3A1P02461 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 AP3S2-216ENST00000617003 1561 ntBASIC21.99■■□□□ 1.11
COL3A1P02461 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL3A1P02461 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.99■■□□□ 1.11
COL3A1P02461 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC21.98■■□□□ 1.11
COL3A1P02461 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL3A1P02461 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
COL3A1P02461 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL3A1P02461 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC21.98■■□□□ 1.11
COL3A1P02461 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL3A1P02461 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
COL3A1P02461 CNN2P2-201ENST00000443536 909 ntBASIC21.98■■□□□ 1.11
COL3A1P02461 CNN2P3-201ENST00000450201 906 ntBASIC21.98■■□□□ 1.11
COL3A1P02461 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC21.98■■□□□ 1.11
COL3A1P02461 AL136317.3-201ENST00000618497 906 ntBASIC21.98■■□□□ 1.11
COL3A1P02461 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL3A1P02461 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
COL3A1P02461 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL3A1P02461 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL3A1P02461 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL3A1P02461 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC21.98■■□□□ 1.11
COL3A1P02461 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC21.98■■□□□ 1.11
COL3A1P02461 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
COL3A1P02461 RELA-227ENST00000615805 2236 ntTSL 5 BASIC21.98■■□□□ 1.11
COL3A1P02461 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL3A1P02461 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL3A1P02461 AC092171.3-201ENST00000610122 2651 ntBASIC21.98■■□□□ 1.11
COL3A1P02461 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COL3A1P02461 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL3A1P02461 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC21.97■■□□□ 1.11
COL3A1P02461 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL3A1P02461 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC21.97■■□□□ 1.11
COL3A1P02461 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
COL3A1P02461 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL3A1P02461 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
COL3A1P02461 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC21.97■■□□□ 1.11
COL3A1P02461 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL3A1P02461 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC21.97■■□□□ 1.11
COL3A1P02461 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL3A1P02461 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC21.97■■□□□ 1.11
COL3A1P02461 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC21.97■■□□□ 1.11
COL3A1P02461 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC21.97■■□□□ 1.11
COL3A1P02461 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC21.97■■□□□ 1.11
COL3A1P02461 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL3A1P02461 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC21.97■■□□□ 1.11
COL3A1P02461 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL3A1P02461 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL3A1P02461 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL3A1P02461 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC21.97■■□□□ 1.11
COL3A1P02461 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
COL3A1P02461 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC21.96■■□□□ 1.11
COL3A1P02461 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL3A1P02461 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL3A1P02461 HLA-H-201ENST00000383620 1096 ntBASIC21.96■■□□□ 1.11
COL3A1P02461 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC21.96■■□□□ 1.11
COL3A1P02461 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC21.96■■□□□ 1.11
COL3A1P02461 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC21.96■■□□□ 1.11
COL3A1P02461 AC061975.2-201ENST00000581722 295 ntBASIC21.96■■□□□ 1.11
COL3A1P02461 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC21.96■■□□□ 1.11
COL3A1P02461 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC21.96■■□□□ 1.11
COL3A1P02461 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC21.96■■□□□ 1.11
COL3A1P02461 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC21.96■■□□□ 1.11
COL3A1P02461 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms