Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
SHOX2O60902 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.88■□□□□ 0.29
SHOX2O60902 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SHOX2O60902 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC16.88■□□□□ 0.29
SHOX2O60902 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SHOX2O60902 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
SHOX2O60902 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SHOX2O60902 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SHOX2O60902 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.88■□□□□ 0.29
SHOX2O60902 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.88■□□□□ 0.29
SHOX2O60902 AC098590.1-201ENST00000468126 897 ntBASIC16.88■□□□□ 0.29
SHOX2O60902 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.88■□□□□ 0.29
SHOX2O60902 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
SHOX2O60902 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.88■□□□□ 0.29
SHOX2O60902 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SHOX2O60902 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.88■□□□□ 0.29
SHOX2O60902 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.88■□□□□ 0.29
SHOX2O60902 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SHOX2O60902 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SHOX2O60902 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.88■□□□□ 0.29
SHOX2O60902 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.88■□□□□ 0.29
SHOX2O60902 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.88■□□□□ 0.29
SHOX2O60902 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SHOX2O60902 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.88■□□□□ 0.29
SHOX2O60902 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SHOX2O60902 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.88■□□□□ 0.29
SHOX2O60902 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.87■□□□□ 0.29
SHOX2O60902 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.87■□□□□ 0.29
SHOX2O60902 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.87■□□□□ 0.29
SHOX2O60902 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.87■□□□□ 0.29
SHOX2O60902 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.87■□□□□ 0.29
SHOX2O60902 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SHOX2O60902 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
SHOX2O60902 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
SHOX2O60902 RPS2P55-201ENST00000397318 883 ntBASIC16.87■□□□□ 0.29
SHOX2O60902 AC107956.1-201ENST00000494359 873 ntBASIC16.87■□□□□ 0.29
SHOX2O60902 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.87■□□□□ 0.29
SHOX2O60902 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.87■□□□□ 0.29
SHOX2O60902 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.87■□□□□ 0.29
SHOX2O60902 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.87■□□□□ 0.29
SHOX2O60902 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
SHOX2O60902 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SHOX2O60902 AC097374.2-201ENST00000618617 1306 ntBASIC16.87■□□□□ 0.29
SHOX2O60902 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.87■□□□□ 0.29
SHOX2O60902 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.87■□□□□ 0.29
SHOX2O60902 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SHOX2O60902 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.87■□□□□ 0.29
SHOX2O60902 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SHOX2O60902 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHOX2O60902 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.86■□□□□ 0.29
SHOX2O60902 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
SHOX2O60902 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHOX2O60902 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SHOX2O60902 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms