Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
ZIC3O60481 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
ZIC3O60481 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
ZIC3O60481 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.11■□□□□ 0.01
ZIC3O60481 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 AC004967.1-201ENST00000453589 447 ntBASIC15.11■□□□□ 0.01
ZIC3O60481 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.11■□□□□ 0.01
ZIC3O60481 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
ZIC3O60481 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.11■□□□□ 0.01
ZIC3O60481 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.11■□□□□ 0.01
ZIC3O60481 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
ZIC3O60481 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.11■□□□□ 0.01
ZIC3O60481 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.11■□□□□ 0.01
ZIC3O60481 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.11■□□□□ 0.01
ZIC3O60481 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
ZIC3O60481 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.11■□□□□ 0.01
ZIC3O60481 AL161645.1-201ENST00000622716 1255 ntBASIC15.11■□□□□ 0.01
ZIC3O60481 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.11■□□□□ 0.01
ZIC3O60481 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
ZIC3O60481 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.11■□□□□ 0.01
ZIC3O60481 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
ZIC3O60481 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
ZIC3O60481 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
ZIC3O60481 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.11■□□□□ 0.01
ZIC3O60481 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ZIC3O60481 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.1■□□□□ 0.01
ZIC3O60481 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
ZIC3O60481 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.1■□□□□ 0.01
ZIC3O60481 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
ZIC3O60481 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.1■□□□□ 0.01
ZIC3O60481 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
ZIC3O60481 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.1■□□□□ 0.01
ZIC3O60481 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
ZIC3O60481 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 ADH5P3-201ENST00000433842 1137 ntBASIC15.1■□□□□ 0.01
ZIC3O60481 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.1■□□□□ 0.01
ZIC3O60481 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.1■□□□□ 0.01
ZIC3O60481 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.1■□□□□ 0.01
ZIC3O60481 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.1■□□□□ 0.01
ZIC3O60481 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.1■□□□□ 0.01
ZIC3O60481 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.1■□□□□ 0.01
ZIC3O60481 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.1■□□□□ 0.01
ZIC3O60481 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.1■□□□□ 0.01
ZIC3O60481 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
ZIC3O60481 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.1■□□□□ 0.01
ZIC3O60481 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 PKD1P1-201ENST00000458669 6805 ntBASIC15.1■□□□□ 0.01
ZIC3O60481 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
ZIC3O60481 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.1■□□□□ 0.01
ZIC3O60481 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ZIC3O60481 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ZIC3O60481 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ZIC3O60481 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
ZIC3O60481 AC078925.2-201ENST00000624013 1973 ntBASIC15.09■□□□□ 0.01
ZIC3O60481 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ZIC3O60481 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
ZIC3O60481 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ZIC3O60481 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ZIC3O60481 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.09■□□□□ 0.01
ZIC3O60481 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ZIC3O60481 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.09■□□□□ 0.01
ZIC3O60481 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.09■□□□□ 0.01
ZIC3O60481 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ZIC3O60481 AL355306.1-201ENST00000415580 579 ntBASIC15.09■□□□□ 0.01
ZIC3O60481 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms