Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.11■□□□□ 0.17
PDLIM1O00151 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM1O00151 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM1O00151 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PDLIM1O00151 ALOX12P2-203ENST00000570921 1945 ntBASIC16.11■□□□□ 0.17
PDLIM1O00151 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM1O00151 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM1O00151 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PDLIM1O00151 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM1O00151 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM1O00151 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM1O00151 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.11■□□□□ 0.17
PDLIM1O00151 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM1O00151 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.11■□□□□ 0.17
PDLIM1O00151 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.1■□□□□ 0.17
PDLIM1O00151 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.1■□□□□ 0.17
PDLIM1O00151 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.1■□□□□ 0.17
PDLIM1O00151 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PDLIM1O00151 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.1■□□□□ 0.17
PDLIM1O00151 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PDLIM1O00151 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.1■□□□□ 0.17
PDLIM1O00151 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 AC124947.2-201ENST00000547118 1133 ntBASIC16.1■□□□□ 0.17
PDLIM1O00151 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.1■□□□□ 0.17
PDLIM1O00151 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.1■□□□□ 0.17
PDLIM1O00151 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.1■□□□□ 0.17
PDLIM1O00151 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.1■□□□□ 0.17
PDLIM1O00151 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 IER3-202ENST00000376377 1350 ntBASIC16.1■□□□□ 0.17
PDLIM1O00151 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM1O00151 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
PDLIM1O00151 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.1■□□□□ 0.17
PDLIM1O00151 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PDLIM1O00151 HLA-A-202ENST00000376806 1854 ntBASIC16.1■□□□□ 0.17
PDLIM1O00151 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.09■□□□□ 0.17
PDLIM1O00151 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.09■□□□□ 0.17
PDLIM1O00151 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.09■□□□□ 0.17
PDLIM1O00151 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PDLIM1O00151 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.09■□□□□ 0.17
PDLIM1O00151 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.09■□□□□ 0.17
PDLIM1O00151 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.09■□□□□ 0.17
PDLIM1O00151 AC024563.2-201ENST00000603282 481 ntBASIC16.09■□□□□ 0.17
PDLIM1O00151 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
PDLIM1O00151 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PDLIM1O00151 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.09■□□□□ 0.17
PDLIM1O00151 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.09■□□□□ 0.17
PDLIM1O00151 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.09■□□□□ 0.17
PDLIM1O00151 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.09■□□□□ 0.17
PDLIM1O00151 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PDLIM1O00151 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.09■□□□□ 0.17
PDLIM1O00151 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM1O00151 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
PDLIM1O00151 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
PDLIM1O00151 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
PDLIM1O00151 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDLIM1O00151 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
PDLIM1O00151 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDLIM1O00151 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDLIM1O00151 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDLIM1O00151 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDLIM1O00151 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.08■□□□□ 0.17
PDLIM1O00151 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.08■□□□□ 0.17
PDLIM1O00151 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms