Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 AC092506.1-202ENST00000401022 528 ntBASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 BNIP3P42-201ENST00000454982 569 ntBASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 BNIP3P29-201ENST00000598302 571 ntBASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 AC011447.5-201ENST00000616168 564 ntBASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 RETN-203ENST00000629642 400 ntTSL 5 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.22■□□□□ 0.83
ZC3H4Q9UPT8 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 STARD13-205ENST00000439831 945 ntTSL 2 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 MYCLP2-201ENST00000449268 967 ntBASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 ELK1P1-201ENST00000485699 580 ntBASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 IGHV3OR16-16-201ENST00000563644 343 ntBASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
ZC3H4Q9UPT8 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
ZC3H4Q9UPT8 LINC00895-201ENST00000629028 1637 ntBASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 RPS19-201ENST00000221975 500 ntTSL 3 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 AC103810.3-201ENST00000583567 96 ntBASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
ZC3H4Q9UPT8 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZC3H4Q9UPT8 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.19■□□□□ 0.82
ZC3H4Q9UPT8 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.19■□□□□ 0.82
ZC3H4Q9UPT8 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZC3H4Q9UPT8 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.19■□□□□ 0.82
ZC3H4Q9UPT8 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZC3H4Q9UPT8 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms