Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NDE1Q9NXR1 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 ID1-201ENST00000376105 1233 ntBASIC16.38■□□□□ 0.21
NDE1Q9NXR1 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
NDE1Q9NXR1 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.37■□□□□ 0.21
NDE1Q9NXR1 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NDE1Q9NXR1 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms