Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRRC40Q9H9A6 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRRC40Q9H9A6 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRRC40Q9H9A6 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRRC40Q9H9A6 AC002310.6-201ENST00000624451 1377 ntBASIC17.14■□□□□ 0.33
LRRC40Q9H9A6 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 DUSP5P1-201ENST00000441325 1139 ntBASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 EMBP1-201ENST00000458200 901 ntBASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 RNPS1P1-201ENST00000507437 918 ntBASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 AL121912.1-201ENST00000603683 238 ntBASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.13■□□□□ 0.33
LRRC40Q9H9A6 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 AC006538.1-201ENST00000567905 1585 ntBASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 RPS15P9-201ENST00000494093 319 ntBASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 AC136632.2-201ENST00000512891 861 ntBASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 REXO1L3P-201ENST00000622202 1288 ntBASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 TP73-AS1-207ENST00000624167 988 ntBASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.12■□□□□ 0.33
LRRC40Q9H9A6 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 AC073621.1-201ENST00000392730 636 ntBASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 FAM197Y8-203ENST00000450145 560 ntBASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 GGTLC5P-201ENST00000617623 998 ntBASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 AC008735.5-201ENST00000623544 497 ntBASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRRC40Q9H9A6 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms