Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.72■□□□□ 0.43
RNF43Q68DV7 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 OR7E47P-204ENST00000575924 449 ntBASIC17.72■□□□□ 0.43
RNF43Q68DV7 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.72■□□□□ 0.43
RNF43Q68DV7 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF43Q68DV7 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF43Q68DV7 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RNF43Q68DV7 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RNF43Q68DV7 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 HCG4B-203ENST00000450128 991 ntBASIC17.71■□□□□ 0.43
RNF43Q68DV7 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF43Q68DV7 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF43Q68DV7 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF43Q68DV7 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RNF43Q68DV7 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.71■□□□□ 0.43
RNF43Q68DV7 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
RNF43Q68DV7 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
RNF43Q68DV7 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
RNF43Q68DV7 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
RNF43Q68DV7 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RNF43Q68DV7 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.7■□□□□ 0.42
RNF43Q68DV7 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.7■□□□□ 0.42
RNF43Q68DV7 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.7■□□□□ 0.42
RNF43Q68DV7 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
RNF43Q68DV7 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.7■□□□□ 0.42
RNF43Q68DV7 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RNF43Q68DV7 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RNF43Q68DV7 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RNF43Q68DV7 FAM8A3P-201ENST00000427218 844 ntBASIC17.7■□□□□ 0.42
RNF43Q68DV7 PAWRP1-201ENST00000451083 565 ntBASIC17.7■□□□□ 0.42
RNF43Q68DV7 AC005829.1-201ENST00000570002 483 ntBASIC17.7■□□□□ 0.42
RNF43Q68DV7 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.7■□□□□ 0.42
RNF43Q68DV7 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RNF43Q68DV7 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.7■□□□□ 0.42
RNF43Q68DV7 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.7■□□□□ 0.42
RNF43Q68DV7 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.7■□□□□ 0.42
RNF43Q68DV7 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.7■□□□□ 0.42
RNF43Q68DV7 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
RNF43Q68DV7 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RNF43Q68DV7 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
RNF43Q68DV7 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
RNF43Q68DV7 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RNF43Q68DV7 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RNF43Q68DV7 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.69■□□□□ 0.42
RNF43Q68DV7 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
RNF43Q68DV7 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
RNF43Q68DV7 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.69■□□□□ 0.42
RNF43Q68DV7 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.69■□□□□ 0.42
RNF43Q68DV7 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF43Q68DV7 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
RNF43Q68DV7 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF43Q68DV7 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RNF43Q68DV7 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF43Q68DV7 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF43Q68DV7 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RNF43Q68DV7 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 166.1 ms