Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 SRD5A3P1-201ENST00000603021 949 ntBASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC11.15□□□□□ -0.62
VPS13DQ5THJ4 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
VPS13DQ5THJ4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC11.15□□□□□ -0.63
VPS13DQ5THJ4 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
VPS13DQ5THJ4 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.63
VPS13DQ5THJ4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.63
VPS13DQ5THJ4 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 AL355994.2-201ENST00000447882 704 ntBASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 IGHV3OR16-16-201ENST00000563644 343 ntBASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 AC010319.3-201ENST00000597028 470 ntBASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 AL391069.4-201ENST00000609583 481 ntBASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 CROCCP2-202ENST00000412962 2773 ntBASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 RPS19-201ENST00000221975 500 ntTSL 3 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC11.14□□□□□ -0.63
VPS13DQ5THJ4 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 AC084346.2-201ENST00000607097 949 ntBASIC11.13□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms