Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.25■□□□□ 0.35
SLC6A4P31645 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SLC6A4P31645 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.25■□□□□ 0.35
SLC6A4P31645 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 AL391256.1-201ENST00000443260 1855 ntBASIC17.25■□□□□ 0.35
SLC6A4P31645 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
SLC6A4P31645 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SLC6A4P31645 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SLC6A4P31645 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 AC004461.1-201ENST00000412461 403 ntBASIC17.25■□□□□ 0.35
SLC6A4P31645 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.25■□□□□ 0.35
SLC6A4P31645 CNN2P11-201ENST00000429351 262 ntBASIC17.25■□□□□ 0.35
SLC6A4P31645 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SLC6A4P31645 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.25■□□□□ 0.35
SLC6A4P31645 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.25■□□□□ 0.35
SLC6A4P31645 SNHG9-202ENST00000564014 471 ntBASIC17.25■□□□□ 0.35
SLC6A4P31645 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.25■□□□□ 0.35
SLC6A4P31645 MIR3909-201ENST00000579518 119 ntBASIC17.25■□□□□ 0.35
SLC6A4P31645 AC022145.2-201ENST00000598203 171 ntBASIC17.25■□□□□ 0.35
SLC6A4P31645 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.25■□□□□ 0.35
SLC6A4P31645 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.25■□□□□ 0.35
SLC6A4P31645 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SLC6A4P31645 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
SLC6A4P31645 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SLC6A4P31645 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.24■□□□□ 0.35
SLC6A4P31645 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.24■□□□□ 0.35
SLC6A4P31645 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.24■□□□□ 0.35
SLC6A4P31645 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.24■□□□□ 0.35
SLC6A4P31645 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.24■□□□□ 0.35
SLC6A4P31645 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
SLC6A4P31645 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SLC6A4P31645 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SLC6A4P31645 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 PMS2P4-201ENST00000412466 1052 ntBASIC17.24■□□□□ 0.35
SLC6A4P31645 TFAMP1-201ENST00000412727 736 ntBASIC17.24■□□□□ 0.35
SLC6A4P31645 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 TIMM8BP1-201ENST00000452384 211 ntBASIC17.24■□□□□ 0.35
SLC6A4P31645 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.24■□□□□ 0.35
SLC6A4P31645 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.24■□□□□ 0.35
SLC6A4P31645 AL135744.1-201ENST00000565098 629 ntBASIC17.24■□□□□ 0.35
SLC6A4P31645 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
SLC6A4P31645 RARRES2P8-201ENST00000566335 367 ntBASIC17.24■□□□□ 0.35
SLC6A4P31645 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SLC6A4P31645 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SLC6A4P31645 AC027612.4-201ENST00000605371 583 ntBASIC17.24■□□□□ 0.35
SLC6A4P31645 AC026120.1-201ENST00000611536 926 ntBASIC17.24■□□□□ 0.35
SLC6A4P31645 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.24■□□□□ 0.35
SLC6A4P31645 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.24■□□□□ 0.35
SLC6A4P31645 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.24■□□□□ 0.35
SLC6A4P31645 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SLC6A4P31645 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SLC6A4P31645 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.23■□□□□ 0.35
SLC6A4P31645 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.23■□□□□ 0.35
SLC6A4P31645 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SLC6A4P31645 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SLC6A4P31645 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.23■□□□□ 0.35
SLC6A4P31645 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.23■□□□□ 0.35
SLC6A4P31645 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SLC6A4P31645 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SLC6A4P31645 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
SLC6A4P31645 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SLC6A4P31645 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SLC6A4P31645 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.23■□□□□ 0.35
SLC6A4P31645 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SLC6A4P31645 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SLC6A4P31645 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.23■□□□□ 0.35
SLC6A4P31645 AP000344.2-201ENST00000512987 629 ntBASIC17.23■□□□□ 0.35
SLC6A4P31645 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.23■□□□□ 0.35
SLC6A4P31645 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
SLC6A4P31645 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.23■□□□□ 0.35
SLC6A4P31645 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SLC6A4P31645 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms