Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 AC078925.2-201ENST00000624013 1973 ntBASIC16.37■□□□□ 0.21
LDLRP01130 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
LDLRP01130 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
LDLRP01130 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.37■□□□□ 0.21
LDLRP01130 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.37■□□□□ 0.21
LDLRP01130 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.37■□□□□ 0.21
LDLRP01130 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.37■□□□□ 0.21
LDLRP01130 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.37■□□□□ 0.21
LDLRP01130 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.37■□□□□ 0.21
LDLRP01130 AC055717.3-201ENST00000622967 595 ntBASIC16.37■□□□□ 0.21
LDLRP01130 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.37■□□□□ 0.21
LDLRP01130 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
LDLRP01130 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDLRP01130 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.37■□□□□ 0.21
LDLRP01130 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.37■□□□□ 0.21
LDLRP01130 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
LDLRP01130 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.36■□□□□ 0.21
LDLRP01130 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 AC092068.3-201ENST00000587894 2016 ntBASIC16.36■□□□□ 0.21
LDLRP01130 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.36■□□□□ 0.21
LDLRP01130 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
LDLRP01130 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.36■□□□□ 0.21
LDLRP01130 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LDLRP01130 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
LDLRP01130 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.36■□□□□ 0.21
LDLRP01130 PGAM5P1-201ENST00000518923 814 ntBASIC16.36■□□□□ 0.21
LDLRP01130 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.36■□□□□ 0.21
LDLRP01130 AC011840.4-201ENST00000578471 627 ntBASIC16.36■□□□□ 0.21
LDLRP01130 MIR5100-201ENST00000579544 119 ntBASIC16.36■□□□□ 0.21
LDLRP01130 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.36■□□□□ 0.21
LDLRP01130 AC140113.2-201ENST00000604370 208 ntBASIC16.36■□□□□ 0.21
LDLRP01130 AC008608.2-201ENST00000606089 416 ntBASIC16.36■□□□□ 0.21
LDLRP01130 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.36■□□□□ 0.21
LDLRP01130 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.36■□□□□ 0.21
LDLRP01130 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDLRP01130 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.35■□□□□ 0.21
LDLRP01130 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.35■□□□□ 0.21
LDLRP01130 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LDLRP01130 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
LDLRP01130 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms