Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
MSH4O15457 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.87■□□□□ 0.61
MSH4O15457 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 AL355306.1-201ENST00000415580 579 ntBASIC18.87■□□□□ 0.61
MSH4O15457 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.87■□□□□ 0.61
MSH4O15457 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 AC004967.1-201ENST00000453589 447 ntBASIC18.87■□□□□ 0.61
MSH4O15457 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.87■□□□□ 0.61
MSH4O15457 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.87■□□□□ 0.61
MSH4O15457 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.87■□□□□ 0.61
MSH4O15457 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
MSH4O15457 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
MSH4O15457 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.87■□□□□ 0.61
MSH4O15457 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.87■□□□□ 0.61
MSH4O15457 AL139011.1-202ENST00000642063 584 ntBASIC18.87■□□□□ 0.61
MSH4O15457 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
MSH4O15457 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
MSH4O15457 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.87■□□□□ 0.61
MSH4O15457 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.87■□□□□ 0.61
MSH4O15457 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
MSH4O15457 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.86■□□□□ 0.61
MSH4O15457 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.86■□□□□ 0.61
MSH4O15457 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
MSH4O15457 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
MSH4O15457 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.86■□□□□ 0.61
MSH4O15457 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.86■□□□□ 0.61
MSH4O15457 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.86■□□□□ 0.61
MSH4O15457 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
MSH4O15457 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
MSH4O15457 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
MSH4O15457 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.86■□□□□ 0.61
MSH4O15457 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
MSH4O15457 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.86■□□□□ 0.61
MSH4O15457 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.86■□□□□ 0.61
MSH4O15457 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.86■□□□□ 0.61
MSH4O15457 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH4O15457 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.85■□□□□ 0.61
MSH4O15457 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
MSH4O15457 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.85■□□□□ 0.61
MSH4O15457 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.85■□□□□ 0.61
MSH4O15457 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 LTB4R2-202ENST00000528054 3092 ntBASIC18.85■□□□□ 0.61
MSH4O15457 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
MSH4O15457 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
MSH4O15457 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
MSH4O15457 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.85■□□□□ 0.61
MSH4O15457 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.85■□□□□ 0.61
MSH4O15457 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.85■□□□□ 0.61
MSH4O15457 AL671277.1-201ENST00000429656 993 ntBASIC18.85■□□□□ 0.61
MSH4O15457 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.85■□□□□ 0.61
MSH4O15457 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.85■□□□□ 0.61
MSH4O15457 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.85■□□□□ 0.61
MSH4O15457 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.85■□□□□ 0.61
MSH4O15457 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.85■□□□□ 0.61
MSH4O15457 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
MSH4O15457 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.85■□□□□ 0.61
MSH4O15457 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms