Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC3O15379 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC3O15379 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HDAC3O15379 TP73-AS1-210ENST00000637775 1455 ntBASIC16.46■□□□□ 0.23
HDAC3O15379 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.46■□□□□ 0.23
HDAC3O15379 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC3O15379 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC3O15379 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.46■□□□□ 0.22
HDAC3O15379 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
HDAC3O15379 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
HDAC3O15379 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
HDAC3O15379 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.45■□□□□ 0.22
HDAC3O15379 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HDAC3O15379 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.45■□□□□ 0.22
HDAC3O15379 HYMAI-201ENST00000635591 3347 ntBASIC16.45■□□□□ 0.22
HDAC3O15379 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HDAC3O15379 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HDAC3O15379 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.45■□□□□ 0.22
HDAC3O15379 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.45■□□□□ 0.22
HDAC3O15379 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 AC148477.5-201ENST00000625164 1645 ntBASIC16.45■□□□□ 0.22
HDAC3O15379 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HDAC3O15379 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HDAC3O15379 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.45■□□□□ 0.22
HDAC3O15379 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.45■□□□□ 0.22
HDAC3O15379 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HDAC3O15379 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.45■□□□□ 0.22
HDAC3O15379 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 AL020989.1-201ENST00000422979 469 ntBASIC16.45■□□□□ 0.22
HDAC3O15379 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 AC091607.1-201ENST00000490318 1060 ntBASIC16.45■□□□□ 0.22
HDAC3O15379 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.45■□□□□ 0.22
HDAC3O15379 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.45■□□□□ 0.22
HDAC3O15379 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
HDAC3O15379 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.45■□□□□ 0.22
HDAC3O15379 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
HDAC3O15379 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.45■□□□□ 0.22
HDAC3O15379 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.45■□□□□ 0.22
HDAC3O15379 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 AC006277.1-201ENST00000624348 1610 ntBASIC16.45■□□□□ 0.22
HDAC3O15379 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC3O15379 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC3O15379 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC3O15379 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HDAC3O15379 AL596087.1-201ENST00000400979 1969 ntBASIC16.44■□□□□ 0.22
HDAC3O15379 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
HDAC3O15379 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HDAC3O15379 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC3O15379 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
HDAC3O15379 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC3O15379 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.44■□□□□ 0.22
HDAC3O15379 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC3O15379 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC3O15379 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.44■□□□□ 0.22
HDAC3O15379 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.44■□□□□ 0.22
HDAC3O15379 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.44■□□□□ 0.22
HDAC3O15379 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.44■□□□□ 0.22
HDAC3O15379 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
HDAC3O15379 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.44■□□□□ 0.22
HDAC3O15379 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC3O15379 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms