Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 AC026471.1-201ENST00000564629 3026 ntBASIC17.3■□□□□ 0.36
TDP1Q9NUW8 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 LINC00895-201ENST00000629028 1637 ntBASIC17.3■□□□□ 0.36
TDP1Q9NUW8 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.3■□□□□ 0.36
TDP1Q9NUW8 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 KRT18P34-201ENST00000488218 1270 ntBASIC17.3■□□□□ 0.36
TDP1Q9NUW8 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 MIR6080-201ENST00000617359 66 ntBASIC17.3■□□□□ 0.36
TDP1Q9NUW8 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TDP1Q9NUW8 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 AL035633.1-201ENST00000406139 838 ntBASIC17.29■□□□□ 0.36
TDP1Q9NUW8 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TDP1Q9NUW8 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 OR6D1P-202ENST00000641007 5290 ntBASIC17.28■□□□□ 0.36
TDP1Q9NUW8 FO538757.1-201ENST00000623083 1397 ntBASIC17.28■□□□□ 0.36
TDP1Q9NUW8 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 AC068880.1-201ENST00000507289 2297 ntBASIC17.28■□□□□ 0.36
TDP1Q9NUW8 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms