Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 UNC93B6-202ENST00000528242 690 ntBASIC13.07□□□□□ -0.32
CCDC140Q96MF4 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 AC124312.2-201ENST00000546615 427 ntTSL 3 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 AC010654.1-201ENST00000615722 808 ntBASIC13.07□□□□□ -0.32
CCDC140Q96MF4 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.07□□□□□ -0.32
CCDC140Q96MF4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC140Q96MF4 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 AC131009.4-201ENST00000624048 1740 ntBASIC13.06□□□□□ -0.32
CCDC140Q96MF4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 PMS2P1-201ENST00000431037 1228 ntBASIC13.06□□□□□ -0.32
CCDC140Q96MF4 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 AC009947.1-201ENST00000444350 727 ntBASIC13.06□□□□□ -0.32
CCDC140Q96MF4 FDX1P1-201ENST00000449115 551 ntBASIC13.06□□□□□ -0.32
CCDC140Q96MF4 RNA5SP415-201ENST00000517246 115 ntBASIC13.06□□□□□ -0.32
CCDC140Q96MF4 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 AC005412.3-201ENST00000580309 715 ntBASIC13.06□□□□□ -0.32
CCDC140Q96MF4 MIR4492-201ENST00000581627 80 ntBASIC13.06□□□□□ -0.32
CCDC140Q96MF4 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 KC6-207ENST00000600644 2311 ntTSL 3 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.06□□□□□ -0.32
CCDC140Q96MF4 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 AL353732.1-201ENST00000569618 1459 ntBASIC13.05□□□□□ -0.32
CCDC140Q96MF4 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms